Pipeline Documentation ====================== The Pipeline module is designed to provide the user with easily callable and command line usable pipelines that allow orthology inference to be completed in a parallel fashion. Soon, there will be many preconfigured pipelines that you can run if you are using a cluster (**specifically one that uses pbspro or sun grid engine**). Examples -------- Running a Blast Pipeline ~~~~~~~~~~~~~~~~~~~~~~~~ .. code:: python Software Dependencies --------------------- Ensure that you have at least pbs version ``14.1.0``